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Galntl6 Gene Detail
Summary
  • Symbol
    Galntl6
  • Name
    UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
  • Synonyms
    1700021K10Rik, 4930431L04Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913581
    NCBI Gene: 270049
  • Alliance
    genome feature page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:58227086-59365674 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 30.72 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    35157 from dbSNP Build 142
  • Strain Annotations
    26
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913581
 protein coding gene Chr8:58225523-59366213 (-)
129S1/SvImJ ENSMUSGG00200054625
 protein coding gene Chr8:53526385-54155525 (-)
129S1/SvImJ ENSMUSG00200007177
 protein coding gene Chr8:53007546-53122763 (-)
A/J ENSMUSGG00195054908
 protein coding gene Chr8:54055511-54547633 (-)
A/J ENSMUSG00195011951
 protein coding gene Chr8:53409139-53615613 (-)
AKR/J ENSMUSG00220005503
 protein coding gene Chr8:53226688-53417779 (-)
AKR/J ENSMUSGG00220054691
 protein coding gene Chr8:53838158-54345310 (-)
BALB/cJ ENSMUSGG00180055223
 protein coding gene Chr8:53668236-54161238 (-)
BALB/cJ ENSMUSG00180014096
 protein coding gene Chr8:53056857-53247942 (-)
C3H/HeJ ENSMUSG00175007374
 protein coding gene Chr8:53234046-53425113 (-)
C3H/HeJ ENSMUSGG00175054923
 protein coding gene Chr8:53845134-54338138 (-)
C57BL/6NJ ENSMUSG00215007484
 protein coding gene Chr8:53034601-53220956 (-)
C57BL/6NJ ENSMUSGG00215055565
 protein coding gene Chr8:53692772-54177424 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031069
 protein coding gene Chr8:50628204-51684423 (-)
CAST/EiJ no annotation
CBA/J ENSMUSG00210009046
 protein coding gene Chr8:53083206-53283891 (-)
CBA/J ENSMUSGG00210054864
 protein coding gene Chr8:53649234-54239121 (-)
DBA/2J ENSMUSG00185007966
 protein coding gene Chr8:59216116-59407200 (-)
DBA/2J ENSMUSGG00185057608
 protein coding gene Chr8:59827528-60320525 (-)
FVB/NJ ENSMUSG00205011263
 protein coding gene Chr8:52471096-52662186 (-)
FVB/NJ ENSMUSGG00205054412
 protein coding gene Chr8:53092643-53578767 (-)
JF1/MsJ ENSUMUG00000010406
 protein coding gene Chr8:61547616-62670553 (-)
LP/J ENSMUSG00230005802
 protein coding gene Chr8:62875129-63066177 (-)
LP/J ENSMUSGG00230055672
 protein coding gene Chr8:63486401-63979364 (-)
NOD/ShiLtJ ENSMUSGG00190054973
 protein coding gene Chr8:53656779-54148172 (-)
NOD/ShiLtJ ENSMUSG00190009432
 protein coding gene Chr8:53004431-53205098 (-)
NZO/HlLtJ ENSMUSG00225030264
 protein coding gene Chr8:66302478-67417895 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    GALNTL6, polypeptide N-acetylgalactosaminyltransferase like 6
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GALNTL6, polypeptide N-acetylgalactosaminyltransferase like 6
  • Synonyms
    GALNACT20, GalNAc-T6L, GALNT17
  • Links
    NCBI Gene ID: 442117
    UniProt: Q49A17

  • Chr Location
    4q34.1; chr4:171812254-173041559 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    756
  • Tissues
    103
  • cDNA Data
    7
  • Literature Summary
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000096914 Ensembl Gene Model | MGI Sequence Detail 1138589 C57BL/6J ±  kb
transcript ENSMUST00000204128 Ensembl | MGI Sequence Detail 5680 Not Applicable  
polypeptide ENSMUSP00000145321 Ensembl | MGI Sequence Detail 601 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 4
Other
Accession IDs
less
MGI:1921140
References
more
  • Summaries
    All 31
    Developmental Gene Expression 4
    Gene Ontology 5
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory