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Tma16 Gene Detail
Summary
  • Symbol
    Tma16
  • Name
    translation machinery associated 16
  • Synonyms
    1810029B16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913532
    NCBI Gene: 66282
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:66928995-66939182 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 8, 33.14 cM, cytoband B3.3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    120 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913532
protein coding gene Chr8:66925770-66939182 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033651
protein coding gene Chr8:66538238-66551444 (-)
A/J MGP_AJ_G0033633
protein coding gene Chr8:63795846-63809544 (-)
AKR/J MGP_AKRJ_G0033558
protein coding gene Chr8:65538722-65555230 (-)
BALB/cJ MGP_BALBcJ_G0033629
protein coding gene Chr8:64016232-64026360 (-)
C3H/HeJ MGP_C3HHeJ_G0033339
protein coding gene Chr8:66320679-66334836 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034146
protein coding gene Chr8:69032391-69049928 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031093
protein coding gene Chr8:58859218-58869089 (-)
CAST/EiJ MGP_CASTEiJ_G0032664
protein coding gene Chr8:65725163-65738128 (-)
CBA/J MGP_CBAJ_G0033317
protein coding gene Chr8:71603563-71618599 (-)
DBA/2J MGP_DBA2J_G0033471
protein coding gene Chr8:63547667-63561312 (-)
FVB/NJ MGP_FVBNJ_G0033412
protein coding gene Chr8:62742839-62755405 (-)
LP/J MGP_LPJ_G0033559
protein coding gene Chr8:66590716-66602911 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033456
protein coding gene Chr8:74233712-74246239 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034164
protein coding gene Chr8:65877378-65893454 (-)
PWK/PhJ MGP_PWKPhJ_G0032373
protein coding gene Chr8:62831183-62844471 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032209
protein coding gene Chr8:64798254-64811946 (-)
WSB/EiJ MGP_WSBEiJ_G0032781
protein coding gene Chr8:66251482-66264049 (-)



Homology
more
  • Human Ortholog
    TMA16, translation machinery associated 16 homolog
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TMA16, translation machinery associated 16 homolog
  • Synonyms
    C4orf43
  • Links
    NCBI Gene ID: 55319
    neXtProt AC: NX_Q96EY4
    UniProt: Q96EY4

  • Chr Location
    4q32.2; chr4:163494442-163520539 (+)  GRCh38

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    12
  • Chemically induced (other)
    1
  • Gene trapped
    9
  • Targeted
    2
  • Genomic Mutations
    1 involving Tma16
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 66282 NCBI Gene Model | MGI Sequence Detail 10188 C57BL/6J ±  kb
transcript NM_001357208 RefSeq | MGI Sequence Detail 1170 C57BL/6  
polypeptide Q9CR02 UniProt | EBI | MGI Sequence Detail 221 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 39
    cDNA 39

    Microarray probesets 5
References
more
  • Summaries
    All 29
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/19/2024
MGI 6.23
The Jackson Laboratory