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Lsm7 Gene Detail
Summary
  • Symbol
    Lsm7
  • Name
    LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
  • Synonyms
    0910001B06Rik, 1110033F18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913344
    NCBI Gene: 66094
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:80688659-80691043 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 39.72 cM, cytoband C1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    153 from dbSNP Build 142
  • Strain Annotations
    28
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913344
 protein coding gene Chr10:80688655-80691043 (-)
129S1/SvImJ ENSMUSG00200043871
 protein coding gene Chr10:74907254-74907750 (+)
129S1/SvImJ ENSMUSG00200046355
 protein coding gene Chr10:77315307-77317695 (-)
A/J ENSMUSG00195043271
 protein coding gene Chr10:77710528-77712918 (-)
A/J ENSMUSG00195048006
 protein coding gene Chr10:75243931-75244426 (+)
AKR/J ENSMUSG00220044653
 protein coding gene Chr10:74903622-74904116 (+)
AKR/J ENSMUSG00220047773
 protein coding gene Chr10:77308216-77310605 (-)
BALB/cJ ENSMUSG00180051052
 protein coding gene Chr10:75258313-75258807 (+)
BALB/cJ ENSMUSG00180049425
 protein coding gene Chr10:77720995-77723385 (-)
C3H/HeJ ENSMUSG00175048523
 protein coding gene Chr10:77591738-77594126 (-)
C3H/HeJ ENSMUSG00175051640
 protein coding gene Chr10:75129418-75129912 (+)
C57BL/6NJ ENSMUSG00215049075
 protein coding gene Chr10:74867186-74867681 (+)
C57BL/6NJ ENSMUSG00215049239
 protein coding gene Chr10:77333592-77335981 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015607
 protein coding gene Chr10:74856396-74858836 (-)
CAST/EiJ ENSTCUG00005050492
 protein coding gene Chr10:77220933-77223452 (-)
CBA/J ENSMUSG00210049683
 protein coding gene Chr10:74985543-74986037 (+)
CBA/J ENSMUSG00210046988
 protein coding gene Chr10:77447780-77450168 (-)
DBA/2J ENSMUSG00185052388
 protein coding gene Chr10:75327899-75328393 (+)
DBA/2J ENSMUSG00185049243
 protein coding gene Chr10:77790232-77792621 (-)
FVB/NJ ENSMUSG00205037502
 protein coding gene Chr10:77503006-77505395 (-)
FVB/NJ ENSMUSG00205041628
 protein coding gene Chr10:75019910-75020406 (+)
JF1/MsJ ENSUMUG00000048923
 protein coding gene Chr10:79023783-79026176 (-)
LP/J ENSMUSG00230049463
 protein coding gene Chr10:79559831-79562219 (-)
LP/J ENSMUSG00230050149
 protein coding gene Chr10:77097375-77097868 (+)
NOD/ShiLtJ ENSMUSG00190051673
 protein coding gene Chr10:75305323-75305816 (+)
NOD/ShiLtJ ENSMUSG00190051267
 protein coding gene Chr10:77703931-77706319 (-)
NZO/HlLtJ ENSMUSG00225052118
 protein coding gene Chr10:83846356-83848744 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ ENSIUOG00005049271
 protein coding gene Chr10:77449027-77451415 (-)



Homology
more
  • Human Ortholog
    LSM7, LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LSM7, LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
  • Synonyms
    LDCA, YNL147W
  • Links
    NCBI Gene ID: 51690
    UniProt: Q9UK45

  • Chr Location
    19p13.3; chr19:2321520-2328612 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    19
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    3
  • Gene trapped
    13
  • Targeted
    2
  • Genomic Mutations
    1 involving Lsm7
  • Find Mice (IMSR)
    7 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    37
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    619
  • Tissues
    22
  • cDNA Data
    61
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66094 NCBI Gene Model | MGI Sequence Detail 2385 C57BL/6J ±  kb
transcript NM_001359149 RefSeq | MGI Sequence Detail 593 C57BL/6  
polypeptide Q9CQQ8 UniProt | EBI | MGI Sequence Detail 103 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 62
    cDNA 61
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:1915966
References
more
  • Summaries
    All 39
    Developmental Gene Expression 1
    Gene Ontology 8
    Phenotypes 9
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory