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Rbm6 Gene Detail
Summary
  • Symbol
    Rbm6
  • Name
    RNA binding motif protein 6
  • Synonyms
    Def-3, g16, NY-LU-12
  • Feature Type
    protein coding gene
  • IDs
    MGI:1338037
    NCBI Gene: 19654
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:107650758-107750436 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 59.07 cM, cytoband F1-F2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    255 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1338037
 protein coding gene Chr9:107650758-107751028 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035270
 protein coding gene Chr9:109676570-109786197 (-)
A/J MGP_AJ_G0035249
 protein coding gene Chr9:105674340-105777024 (-)
AKR/J MGP_AKRJ_G0035181
 protein coding gene Chr9:108312150-108415822 (-)
BALB/cJ MGP_BALBcJ_G0035243
 protein coding gene Chr9:105343461-105447378 (-)
C3H/HeJ MGP_C3HHeJ_G0034953
 protein coding gene Chr9:108707227-108816275 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035763
 protein coding gene Chr9:112653598-112754001 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032661
 protein coding gene Chr9:103103549-103203583 (-)
CAST/EiJ MGP_CASTEiJ_G0034264
 protein coding gene Chr9:108661914-108770637 (-)
CBA/J MGP_CBAJ_G0034921
 protein coding gene Chr9:116628882-116743267 (-)
DBA/2J MGP_DBA2J_G0035082
 protein coding gene Chr9:105133899-105231442 (-)
FVB/NJ MGP_FVBNJ_G0035030
 protein coding gene Chr9:103896160-103997439 (-)
LP/J MGP_LPJ_G0035158
 protein coding gene Chr9:109868753-109983571 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035069
 protein coding gene Chr9:118240001-118349608 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035784
 protein coding gene Chr9:108588039-108693807 (-)
PWK/PhJ MGP_PWKPhJ_G0033971
 protein coding gene Chr9:105450733-105552133 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033806
 protein coding gene Chr9:108640084-108755201 (-)
WSB/EiJ MGP_WSBEiJ_G0034385
 protein coding gene Chr9:108465688-108574691 (-)



Homology
more
  • Human Ortholog
    RBM6, RNA binding motif protein 6
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RBM6, RNA binding motif protein 6
  • Synonyms
    3G2, DEF3, DEF-3, g16, HLC-11, NY-LU-12
  • Links
    NCBI Gene ID: 10180
    neXtProt AC: NX_P78332
    UniProt: P78332

  • Chr Location
    3p21.31; chr3:49940007-50100045 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    740
  • Tissues
    34
  • cDNA Data
    109
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000032582 Ensembl Gene Model | MGI Sequence Detail 99679 C57BL/6J ±  kb
transcript ENSMUST00000183032 Ensembl | MGI Sequence Detail 3716 Not Applicable  
polypeptide ENSMUSP00000138400 Ensembl | MGI Sequence Detail 1118 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 115
    Genomic 1
    cDNA 112
    Primer pair 1
    Other 1

    Microarray probesets 6
References
more
  • Summaries
    All 35
    Developmental Gene Expression 2
    Gene Ontology 2
    Phenotypes 10
  • Earliest
    J:54520 Drabkin HA, et al., DEF-3(g16/NY-LU-12), an RNA binding protein from the 3p21.3 homozygous deletion region in SCLC. Oncogene. 1999 Apr 22;18(16):2589-97
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory