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Hoxa11os Gene Detail
Summary
  • Symbol
    Hoxa11os
  • Name
    homeobox A11, opposite strand
  • Synonyms
    Hoxa11as, Hoxa11os
  • Feature Type
    lncRNA gene
  • IDs
    MGI:107208
    NCBI Gene: 15397
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:52222223-52226749 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 25.40 cM
Strain
Comparison
more
  • SNPs within 2kb
    7 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_107208
 lncRNA gene Chr6:52221373-52226779 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015631
 unclassified non-coding RNA gene Chr6:51486426-51491834 (+)
A/J MGP_AJ_G0015607
 unclassified non-coding RNA gene Chr6:49080213-49085618 (+)
AKR/J MGP_AKRJ_G0015570
 unclassified non-coding RNA gene Chr6:50786645-50792053 (+)
BALB/cJ MGP_BALBcJ_G0015569
 unclassified non-coding RNA gene Chr6:49440857-49446262 (+)
C3H/HeJ MGP_C3HHeJ_G0015391
 unclassified non-coding RNA gene Chr6:50795680-50801088 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016022
 unclassified non-coding RNA gene Chr6:52621860-52627266 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0013756
 unclassified non-coding RNA gene Chr6:46728045-46733458 (+)
CAST/EiJ MGP_CASTEiJ_G0014947
 unclassified non-coding RNA gene Chr6:50610614-50616022 (+)
CBA/J MGP_CBAJ_G0015372
 unclassified non-coding RNA gene Chr6:54822866-54828274 (+)
DBA/2J MGP_DBA2J_G0015466
 unclassified non-coding RNA gene Chr6:49002644-49008052 (+)
FVB/NJ MGP_FVBNJ_G0015473
 unclassified non-coding RNA gene Chr6:48614192-48619597 (+)
LP/J MGP_LPJ_G0015547
 unclassified non-coding RNA gene Chr6:51464255-51469663 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015496
 unclassified non-coding RNA gene Chr6:57450661-57456068 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016064
 unclassified non-coding RNA gene Chr6:50715319-50720727 (+)
PWK/PhJ MGP_PWKPhJ_G0014731
 unclassified non-coding RNA gene Chr6:48626619-48632070 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014520
 unclassified non-coding RNA gene Chr6:50050651-50056067 (+)
WSB/EiJ MGP_WSBEiJ_G0015051
 unclassified non-coding RNA gene Chr6:50731474-50736881 (+)



Homology
more
  • Human Ortholog
    HOXA11-AS, HOXA11 antisense RNA
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    HOXA11-AS, HOXA11 antisense RNA
  • Synonyms
    HOXA11AS, HOXA11-AS1, HOXA11S, HOXA-AS5, LncHOXA11, NCRNA00076
  • Links
    NCBI Gene ID: 221883

  • Chr Location
    7p15.2; chr7:27184507-27189298 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    756
  • Tissues
    35
  • cDNA Data
    28
  • Literature Summary
    9
Sequences &
Gene Models
less
  • All Sequences
    35
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 15397 NCBI Gene Model | MGI Sequence Detail 4527 C57BL/6J ±  kb
transcript NR_015348 RefSeq | MGI Sequence Detail 1560 ZRU/MplStud  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 31
    cDNA 28
    Primer pair 1
    Other 2

    Microarray probesets 4
Other
Accession IDs
less
MGD-MRK-35670
References
more
  • Summaries
    All 33
    Developmental Gene Expression 9
    Gene Ontology 1
    Phenotypes 11
  • Earliest
    J:25252 Hsieh-Li HM, et al., Hoxa 11 structure, extensive antisense transcription, and function in male and female fertility. Development. 1995 May;121(5):1373-85
  • Latest
    J:344661 Shmuel-Galia L, et al., The lncRNA HOXA11os regulates mitochondrial function in myeloid cells to maintain intestinal homeostasis. Cell Metab. 2023 Aug 8;35(8):1441-1456.e9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory