6330418K02Rik MGI Mouse Gene Detail - MGI:3697416

Sequence Map

Chr5:138262307-138264923 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3697416	lncRNA gene	Chr5:138262305-138264926 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004207	antisense lncRNA gene	Chr5:143113834-143116452 (+)
A/J	MGP_AJ_G0004185	antisense lncRNA gene	Chr5:136993133-136995751 (+)
AKR/J	MGP_AKRJ_G0004166	antisense lncRNA gene	Chr5:141365135-141367753 (+)
BALB/cJ	MGP_BALBcJ_G0004172	antisense lncRNA gene	Chr5:138327523-138330141 (+)
C3H/HeJ	MGP_C3HHeJ_G0004120	antisense lncRNA gene	Chr5:142088780-142091398 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004321	antisense lncRNA gene	Chr5:148411926-148414544 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003795	antisense lncRNA gene	Chr5:131012010-131014631 (+)
CAST/EiJ	MGP_CASTEiJ_G0004082	antisense lncRNA gene	Chr5:141424695-141427322 (+)
CBA/J	MGP_CBAJ_G0004114	antisense lncRNA gene	Chr5:154463753-154466371 (+)
DBA/2J	MGP_DBA2J_G0004130	antisense lncRNA gene	Chr5:136886687-136889305 (+)
FVB/NJ	MGP_FVBNJ_G0004146	antisense lncRNA gene	Chr5:135988939-135991557 (+)
LP/J	MGP_LPJ_G0004208	antisense lncRNA gene	Chr5:143660867-143663485 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004136	antisense lncRNA gene	Chr5:157215960-157218578 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004318	antisense lncRNA gene	Chr5:141170358-141172976 (+)
PWK/PhJ	MGP_PWKPhJ_G0004035	antisense lncRNA gene	Chr5:135853214-135855832 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003979	antisense lncRNA gene	Chr5:138774580-138777188 (+)
WSB/EiJ	MGP_WSBEiJ_G0004118	antisense lncRNA gene	Chr5:141858460-141861078 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	69004	NCBI Gene Model \| MGI Sequence Detail	2617	C57BL/6J	± kb
	transcript	NR_045821	RefSeq \| MGI Sequence Detail	741	C57BL/6

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Summaries

All 12

Phenotypes 3
Earliest

J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
Latest

J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 6330418K02Rik:

(View these features in JBrowse)

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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