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Cfap77 Gene Detail
Summary
  • Symbol
    Cfap77
  • Name
    cilia and flagella associated protein 77
  • Synonyms
    1700101E01Rik, LOC329375
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685669
    NCBI Gene: 329375
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:28845493-28945078 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 19.38 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2562 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685669
 protein coding gene Chr2:28816961-28945078 (-)
129S1/SvImJ ENSMUSG00200051703
 protein coding gene Chr2:25788053-25914836 (-)
A/J ENSMUSG00195047284
 protein coding gene Chr2:25880854-26009006 (-)
AKR/J ENSMUSG00220048903
 protein coding gene Chr2:25998572-26126730 (-)
BALB/cJ ENSMUSG00180049907
 protein coding gene Chr2:25899809-26027932 (-)
C3H/HeJ ENSMUSG00175048932
 protein coding gene Chr2:25869015-25997127 (-)
C57BL/6NJ ENSMUSG00215042786
 protein coding gene Chr2:25927831-26055947 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023362
 protein coding gene Chr2:24799690-24926621 (-)
CAST/EiJ ENSTCUG00005051122
 protein coding gene Chr2:25616365-25743344 (-)
CBA/J ENSMUSG00210016029
 protein coding gene Chr2:25902608-26030443 (-)
DBA/2J ENSMUSG00185047106
 protein coding gene Chr2:25794695-25922817 (-)
FVB/NJ ENSMUSG00205041942
 protein coding gene Chr2:25646551-25774691 (-)
JF1/MsJ ENSUMUG00000055387
 protein coding gene Chr2:25700988-25827785 (-)
LP/J ENSMUSG00230040718
 protein coding gene Chr2:27723919-27850695 (-)
NOD/ShiLtJ ENSMUSG00190036417
 protein coding gene Chr2:25901530-26029650 (-)
NZO/HlLtJ ENSMUSG00225006907
 protein coding gene Chr2:35471594-35599726 (-)
PWK/PhJ ENSLUMG00010051676
 protein coding gene Chr2:25775822-25903143 (-)
SPRET/EiJ ENSMSPG00010040452
 protein coding gene Chr2:26521373-26647406 (-)
WSB/EiJ ENSIUOG00005052140
 protein coding gene Chr2:25754621-25881186 (-)



Homology
more
  • Human Ortholog
    CFAP77, cilia and flagella associated protein 77
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CFAP77, cilia and flagella associated protein 77
  • Synonyms
    C9orf171
  • Links
    NCBI Gene ID: 389799
    UniProt: Q6ZQR2

  • Chr Location
    9q34.13; chr9:132410043-132573319 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    5
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 329375 NCBI Gene Model | MGI Sequence Detail 99586 C57BL/6J ±  kb
transcript NM_001436061 RefSeq | MGI Sequence Detail 1786 C57BL/6  
polypeptide A0A087WRI3 UniProt | EBI | MGI Sequence Detail 283 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 1
References
more
  • Summaries
    All 24
    Gene Ontology 5
    Phenotypes 4
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:386071 Wang H, et al., Microtubule Inner Protein CFAP77 Contributes to Sperm Motility and Male Fertility in Mice. Andrology. 2025 Nov 29;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory