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Orc6 Gene Detail
Summary
  • Symbol
    Orc6
  • Name
    origin recognition complex, subunit 6
  • Synonyms
    6720420I10Rik, Orc6l
  • Feature Type
    protein coding gene
  • IDs
    MGI:1929285
    NCBI Gene: 56452
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:86026261-86034907 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 8, 41.61 cM, cytoband C3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    116 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1929285
protein coding gene Chr8:86026261-86034908 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033899
protein coding gene Chr8:86222249-86232760 (+)
A/J MGP_AJ_G0033882
protein coding gene Chr8:82821517-82829665 (+)
AKR/J MGP_AKRJ_G0033808
protein coding gene Chr8:85286990-85295657 (+)
BALB/cJ MGP_BALBcJ_G0033875
protein coding gene Chr8:82965079-82973918 (+)
C3H/HeJ MGP_C3HHeJ_G0033586
protein coding gene Chr8:85907313-85915461 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034396
protein coding gene Chr8:89569604-89577753 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031336
protein coding gene Chr8:76615856-76624408 (+)
CAST/EiJ MGP_CASTEiJ_G0032915
protein coding gene Chr8:85337125-85345787 (+)
CBA/J MGP_CBAJ_G0033561
protein coding gene Chr8:92575427-92583575 (+)
DBA/2J MGP_DBA2J_G0033714
protein coding gene Chr8:82463490-82471638 (+)
FVB/NJ MGP_FVBNJ_G0033662
protein coding gene Chr8:81417048-81425167 (+)
LP/J MGP_LPJ_G0033806
protein coding gene Chr8:86336908-86346427 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033705
protein coding gene Chr8:95123928-95132077 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034413
protein coding gene Chr8:85294886-85303035 (+)
PWK/PhJ MGP_PWKPhJ_G0032619
protein coding gene Chr8:81715859-81724127 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032455
protein coding gene Chr8:84089378-84097540 (+)
WSB/EiJ MGP_WSBEiJ_G0033028
protein coding gene Chr8:85708711-85717351 (+)



Homology
more
  • Human Ortholog
    ORC6, origin recognition complex subunit 6
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ORC6, origin recognition complex subunit 6
  • Synonyms
    ORC6L
  • Links
    NCBI Gene ID: 23594
    neXtProt AC: NX_Q9Y5N6
    UniProt: Q9Y5N6

  • Chr Location
    16q11.2; chr16:46689643-46698394 (+)  GRCh38

Human Diseases
more
  • Diseases
    1 with human ORC6 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    11 phenotypes from 1 allele in 1 genetic background
    38 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele show complete embryonic lethality before implantation associated with abnormal morula morphology, increased cell death, and failure of blastocyst formation.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000031697 Ensembl Gene Model | MGI Sequence Detail 8647 C57BL/6J ±  kb
    transcript ENSMUST00000034132 Ensembl | MGI Sequence Detail 1287 Not Applicable  
    polypeptide ENSMUSP00000034132 Ensembl | MGI Sequence Detail 262 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 9
      cDNA 8
      Primer pair 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:1924394
    References
    more
    • Summaries
      All 66
      Developmental Gene Expression 2
      Gene Ontology 6
      Phenotypes 38
    • Earliest
      J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
    • Latest
      J:339148 Jaremko MJ, et al., The dynamic nature of the human origin recognition complex revealed through five cryoEM structures. Elife. 2020 Aug 18;9

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    last database update
    03/19/2024
    MGI 6.23
    The Jackson Laboratory