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Armc9 Gene Detail
Summary
  • Symbol
    Armc9
  • Name
    armadillo repeat containing 9
  • Synonyms
    3830422A13Rik, 4831423D23Rik, 4930438O05Rik, 5730415N24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1926045
    NCBI Gene: 78795
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:86082502-86206006 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 43.94 cM, cytoband C5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    750 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1926045
 protein coding gene Chr1:86082436-86207491 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016244
 protein coding gene Chr1:87396273-87526936 (+)
A/J MGP_AJ_G0016225
 protein coding gene Chr1:84161088-84289742 (+)
AKR/J MGP_AKRJ_G0016186
 protein coding gene Chr1:86596169-86729093 (+)
BALB/cJ MGP_BALBcJ_G0016182
 protein coding gene Chr1:84276668-84400128 (+)
C3H/HeJ MGP_C3HHeJ_G0016010
 protein coding gene Chr1:86852195-86981342 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016638
 protein coding gene Chr1:90721867-90851891 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014360
 protein coding gene Chr1:78656444-78784539 (+)
CAST/EiJ MGP_CASTEiJ_G0015595
 protein coding gene Chr1:86087782-86225285 (+)
CBA/J MGP_CBAJ_G0015986
 protein coding gene Chr1:93539807-93670382 (+)
DBA/2J MGP_DBA2J_G0016089
 protein coding gene Chr1:83469789-83596838 (+)
FVB/NJ MGP_FVBNJ_G0016088
 protein coding gene Chr1:82514298-82646075 (+)
LP/J MGP_LPJ_G0016160
 protein coding gene Chr1:88501109-88629769 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016114
 protein coding gene Chr1:96825019-96951286 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016681
 protein coding gene Chr1:86724139-86858798 (+)
PWK/PhJ MGP_PWKPhJ_G0015382
 protein coding gene Chr1:82752254-82880784 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015162
 protein coding gene Chr1:85703421-85830898 (+)
WSB/EiJ MGP_WSBEiJ_G0015659
 protein coding gene Chr1:86369060-86500284 (+)



Homology
more
  • Human Ortholog
    ARMC9, armadillo repeat containing 9
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ARMC9, armadillo repeat containing 9
  • Synonyms
    ARM, JBTS30, KU-MEL-1, NS21
  • Links
    NCBI Gene ID: 80210
    neXtProt AC: NX_Q7Z3E5
    UniProt: Q7Z3E5

  • Chr Location
    2q37.1; chr2:231198546-231376848 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human ARMC9 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    13
  • GO References
    5
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    46
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000062590 Ensembl Gene Model | MGI Sequence Detail 123505 C57BL/6J ±  kb
transcript ENSMUST00000113309 Ensembl | MGI Sequence Detail 3555 Not Applicable  
polypeptide ENSMUSP00000108934 Ensembl | MGI Sequence Detail 818 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 46
    cDNA 46

    Microarray probesets 8
Other
Accession IDs
less
MGI:1917791, MGI:1917934, MGI:1925985
References
more
  • Summaries
    All 35
    Gene Ontology 5
    Phenotypes 10
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:262140 Breslow DK, et al., A CRISPR-based screen for Hedgehog signaling provides insights into ciliary function and ciliopathies. Nat Genet. 2018 Mar;50(3):460-471
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory