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Btf3l4 Gene Detail
Summary
  • Symbol
    Btf3l4
  • Name
    basic transcription factor 3-like 4
  • Synonyms
    4632412E09Rik, 5730434I03Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915312
    NCBI Gene: 70533
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:108671492-108690811 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 50.64 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    99 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915312
 protein coding gene Chr4:108671489-108691445 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028561
 protein coding gene Chr4:109569580-109589907 (-)
A/J MGP_AJ_G0028524
 protein coding gene Chr4:105622475-105639218 (-)
AKR/J MGP_AKRJ_G0028471
 protein coding gene Chr4:108252985-108273648 (-)
BALB/cJ MGP_BALBcJ_G0028543
 protein coding gene Chr4:105830040-105850183 (-)
C3H/HeJ MGP_C3HHeJ_G0028257
 protein coding gene Chr4:108991823-109009574 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028983
 protein coding gene Chr4:113493518-113515506 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026274
 protein coding gene Chr4:100912493-100931591 (-)
CAST/EiJ MGP_CASTEiJ_G0027693
 protein coding gene Chr4:106845141-106866440 (-)
CBA/J MGP_CBAJ_G0028226
 protein coding gene Chr4:117228782-117250197 (-)
DBA/2J MGP_DBA2J_G0028374
 protein coding gene Chr4:105253143-105270747 (-)
FVB/NJ MGP_FVBNJ_G0028342
 protein coding gene Chr4:104116875-104137649 (-)
LP/J MGP_LPJ_G0028475
 protein coding gene Chr4:109811251-109828597 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028368
 protein coding gene Chr4:122428933-122449840 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029019
 protein coding gene Chr4:108496207-108514641 (-)
PWK/PhJ MGP_PWKPhJ_G0027419
 protein coding gene Chr4:103532538-103553535 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027243
 protein coding gene Chr4:105851967-105877178 (-)
WSB/EiJ MGP_WSBEiJ_G0027774
 protein coding gene Chr4:108669988-108690110 (-)



Homology
more
  • Human Ortholog
    BTF3L4, basic transcription factor 3 like 4
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    BTF3L4, basic transcription factor 3 like 4
  • Links
    NCBI Gene ID: 91408
    neXtProt AC: NX_Q96K17
    UniProt: Q96K17

  • Chr Location
    1p32.3; chr1:52056199-52090716 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    15 phenotype references
  • All Mutations and Alleles
    66
  • Chemically induced (other)
    2
  • Endonuclease-mediated
    1
  • Gene trapped
    59
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    4 involving Btf3l4
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    37 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    821
  • Tissues
    106
  • cDNA Data
    23
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028568 Ensembl Gene Model | MGI Sequence Detail 19320 C57BL/6J ±  kb
transcript ENSMUST00000102739 Ensembl | MGI Sequence Detail 723 Not Applicable  
polypeptide ENSMUSP00000099800 Ensembl | MGI Sequence Detail 158 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 24
    cDNA 24

    Microarray probesets 7
Other
Accession IDs
less
MGI:1917783, MGI:2140228, MGI:2140465, MGI:2140597
References
more
  • Summaries
    All 39
    Developmental Gene Expression 3
    Phenotypes 15
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory