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Snrpd3 Gene Detail
Summary
  • Symbol
    Snrpd3
  • Name
    small nuclear ribonucleoprotein D3
  • Synonyms
    1700043E15Rik, 2310009E13Rik, SMD3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914582
    NCBI Gene: 67332
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:75353852-75371300 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 38.55 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    84 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914582
 protein coding gene Chr10:75353385-75373215 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017356
 protein coding gene Chr10:75692972-75712875 (+)
A/J MGP_AJ_G0017333
 protein coding gene Chr10:73096246-73116082 (+)
AKR/J MGP_AKRJ_G0017294
 protein coding gene Chr10:75057942-75077762 (+)
BALB/cJ MGP_BALBcJ_G0017293
 protein coding gene Chr10:73290248-73310085 (+)
C3H/HeJ MGP_C3HHeJ_G0017117
 protein coding gene Chr10:75094906-75114725 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017751
 protein coding gene Chr10:78376817-78396645 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015441
 protein coding gene Chr10:69555132-69574686 (+)
CAST/EiJ MGP_CASTEiJ_G0016688
 protein coding gene Chr10:75407895-75428960 (+)
CBA/J MGP_CBAJ_G0017089
 protein coding gene Chr10:81441582-81461399 (+)
DBA/2J MGP_DBA2J_G0017194
 protein coding gene Chr10:72395633-72415504 (+)
FVB/NJ MGP_FVBNJ_G0017187
 protein coding gene Chr10:71534822-71554469 (+)
LP/J MGP_LPJ_G0017267
 protein coding gene Chr10:76181024-76203235 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017215
 protein coding gene Chr10:83543195-83563049 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017790
 protein coding gene Chr10:75079963-75100555 (+)
PWK/PhJ MGP_PWKPhJ_G0016471
 protein coding gene Chr10:72218219-72239225 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016254
 protein coding gene Chr10:74329028-74348421 (+)
WSB/EiJ MGP_WSBEiJ_G0016751
 protein coding gene Chr10:75054696-75074282 (+)



Homology
more
  • Human Ortholog
    SNRPD3, small nuclear ribonucleoprotein D3 polypeptide
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNRPD3, small nuclear ribonucleoprotein D3 polypeptide
  • Synonyms
    Sm-D3, SMD3
  • Links
    NCBI Gene ID: 6634
    neXtProt AC: NX_P62318
    UniProt: P62318

  • Chr Location
    22q11.23; chr22:24555650-24582052 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human SNRPD3 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    61
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    10
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67332 NCBI Gene Model | MGI Sequence Detail 17449 C57BL/6J ±  kb
transcript NM_026095 RefSeq | MGI Sequence Detail 654 C57BL/6  
polypeptide P62320 UniProt | EBI | MGI Sequence Detail 126 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 6
Other
Accession IDs
less
MGI:1925629, MGI:2143794
References
more
  • Summaries
    All 43
    Developmental Gene Expression 2
    Gene Ontology 8
    Phenotypes 10
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:189260 Scruggs BS, et al., SmD3 Regulates Intronic Noncoding RNA Biogenesis. Mol Cell Biol. 2012 Oct;32(20):4092-103
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory