rs6411636 SNP Detail

Summary

• ID
  rs6411636
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:5102325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGCTGAT GTCTATCTCT
  AGCCTGCGGT TCTCATTTTA AAATTTGCCC TACTCTCAGC TTATTATGGG GTGCTTGAAT
  CATTTTGCTA GTTACCTCTG AAATTAATTT TATTGTAATC AAATTAATAA GCGGATATGT
  GGGGAACAGC ATCTTCTCAT ACTAGCGATC TCTTCATTTA TATCGACTGA AAGTGTTTTT
  K
  CTGACCGCTC AGAAGGTGCA TAGATCTTTG CTTGCTGCAT AAATGCCAAG CTATAAGAAT
  TAAAGACATG ACTAAACTAA CCAAAAGCAA TTTCAAAGAT TGGCTTAGAC TCAGAAGGAG
  TTAAGTAATC TTCCGAATTT TTTTTCAATC ATGGCATCAC TGTGGCTTAA TGATTTCTGA
  ACATAGGAGT TTCTGTTTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8817853	WI_WGS_6_4807090	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6411636					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5102325 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp1r9a	protein phosphatase 1, regulatory subunit 9A			Intron
				Noncoding-Transcript-Variant
Rr626092	regulatory region 626092			462 bp proximal
Rr626093	regulatory region 626093			1513 bp proximal