rs6398342 SNP Detail

Summary

• ID
  rs6398342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:5102227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGATACC CTATGTGGGG
  ATTCATAGTC ACTAATTTTC CTTTTCTTTT TCTTGCACTG GGAACCAACC TAGGGCTTTG
  GGCACTGGTC ACGTGCTCCA CCGCTGATGT CTATCTCTAG CCTGCGGTTC TCATTTTAAA
  ATTTGCCCTA CTCTCAGCTT ATTATGGGGT GCTTGAATCA TTTTGCTAGT TACCTCTGAA
  R
  TTAATTTTAT TGTAATCAAA TTAATAAGCG GATATGTGGG GAACAGCATC TTCTCATACT
  AGCGATCTCT TCATTTATAT CGACTGAAAG TGTTTTTGCT GACCGCTCAG AAGGTGCATA
  GATCTTTGCT TGCTGCATAA ATGCCAAGCT ATAAGAATTA AAGACATGAC TAAACTAACC
  AAAAGCAATT TCAAAGATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8804530	WI_WGS_6_4806992	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6398342					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5102227 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp1r9a	protein phosphatase 1, regulatory subunit 9A			Intron
				Noncoding-Transcript-Variant
Rr626092	regulatory region 626092			560 bp proximal
Rr626093	regulatory region 626093			1611 bp proximal