rs6398264 SNP Detail

Summary

• ID
  rs6398264
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:5102187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         agcattttac
  aacacacctc tggctcttat ttctttctgc cccttctccc cttcttcctc agtgtgcccc
  gagcccattt gttaggtggg tagagatacc ctatgtgggg attcatagtc actaattttc
  CTTTTCTTTT TCTTGCACTG GGAACCAACC TAGGGCTTTG GGCACTGGTC ACGTGCTCCA
  CCGCTGATGT CTATCTCTAG CCTGCGGTTC TCATTTTAAA ATTTGCCCTA CTCTCAGCTT
  M
  TTATGGGGTG CTTGAATCAT TTTGCTAGTT ACCTCTGAAN TTAATTTTAT TGTAATCAAA
  TTAATAAGCG GATATGTGGG GAACAGCATC TTCTCATACT AGCGATCTCT TCATTTATAT
  CGACTGAAAG TGTTTTTNCT GACCGCTCAG AAGGNGCATA GATCTTTGCT TGNTGCATAA
  ATGCCAAGCT ATAAGAATTA AAGACATGAC TAAACTAACN AAAAGCAATT TCAAAGATTG
  GNTTAGACTC                                                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8804452	WI_WGS_6_4806952	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6398264					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5102187 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp1r9a	protein phosphatase 1, regulatory subunit 9A			Intron
				Noncoding-Transcript-Variant
Rr626091	regulatory region 626091			1973 bp distal
Rr626092	regulatory region 626092			600 bp proximal
Rr626093	regulatory region 626093			1651 bp proximal