rs6390484 SNP Detail

Summary

• ID
  rs6390484
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:59403878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAATTCAC TATTCACTCT
  GTCTCTGTAT AGAGTAGGTG GCTCCTCACA AAGTCTTGTG CAATGATATG AAAGCAAGCA
  GACAACAGGC GTTTACTATG TTGTGAAATG GACAATGTAT TAAGTATTTA GAGTTGTCAC
  TGCAAAATGT TCCGGTCCCT CTCCTGCATT ACTAACTCCA AGAGTGTAGA TGGCTTTGGA
  S
  ACAGCCCCTT TGAGCTGCTG CTGCAACACT GTGAAGTCTA CTGAGCTGCT GTAGATGGTG
  CTAAACAACA CCACAAGAAC TATTATAACT GAGTATTTGT TTGCAAAAAT TGCAGCTATA
  ATTCACACAA CTACTTATTA AGGGGGTGTT ACTCCTTTTT TTTAGAAACT GCTTGAGAGT
  GGGGTAGTAA GCAGCCTGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8796655	WI_WGS_6_59955437	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6390484					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:59403878 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17493	CpG island 17493	316 bp distal
Gprin3	GPRIN family member 3	599 bp upstream
Rr631269	regulatory region 631269	610 bp distal
Rr631270	regulatory region 631270	109 bp distal
Tssr61184	transcription start site region 61184	548 bp upstream