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rs6389500 SNP Detail
Summary
  • ID
    rs6389500
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr6:59403733 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCGCCCTGG GGGAGCTTAG
    GGGACTGGCT GACTGTGCCT CTGGTGCAAG GGAACCAGTG ACAGATGGAA AGTTAAGATG
    GAGATTAGGG AAAAGGGCTG GGGACCCAGA GAGACTCAGC AGGAAGTCTG GCCCTCACTC
    CCTCTAGCAA TTCACTATTC ACTCTGTCTC TGTATAGAGT AGGTGGCTCC TCACAAAGTC
    W
    TGTGCAATGA TATGAAAGCA AGCAGACAAC AGGCGTTTAC TATGTTGTGA AATGGACAAT
    GTATTAAGTA TTTAGAGTTG TCACTGCAAA ATGTTCCGGT CCCTCTCCTG CATTACTAAC
    TCCAAGAGTG TAGATGGCTT TGGAGACAGC CCCTTTGAGC TGCTGCTGCA ACACTGTGAA
    GTCTACTGAG CTGCTGTAGA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
C57BL/6J
CZECHII/EiJ
ss8795668 WI_WGS_6_59955292 WI MOUSE f SNP T A
SNP Consensus Information
SNP Consensus Type
C57BL/6J
CZECHII/EiJ
rs6389500 SNP T A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:59403733 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi17493 CpG island 17493 171 bp distal
Gprin3 GPRIN family member 3 454 bp upstream
Rr631269 regulatory region 631269 465 bp distal
Rr631270 regulatory region 631270 within coordinates
Tssr61184 transcription start site region 61184 403 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory