rs6389418 SNP Detail

Summary

• ID
  rs6389418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163482653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATATAAA GTAACCAGCA
  CAATTCCTGA CCTACAAAGG GCTCAATATA TTGAGTAAGT ATGTCCAACA GGAAGAGTGA
  ATCTAATAAG CTCTCTATTG CCCTCTTCTG TCTTTGGTGG ATTATTCCCA TCCTGGGCAT
  TATTGGCCTG CCAAGCCCAC ATCTACAAGC CAAAGAAAGT AAAGATTACC AGCAAACCAA
  Y
  AGGGCAAAGG CACAACGTCT CTAATCAATT GCAGAAGGTT AACAATCCTG AGCCACAGTA
  ATGTCAGATC TGTAGCTTCC ACCCATTGCT ATAGCTTATA CTGATTTGTG ATACTTTGCT
  TGAAAGTACG AGCAAACTAA TTATAATGGT TCGTTTATAC TTGGCCCAGG GAGAAGCACT
  AATAAGAGGC GCAGCATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8795586	WI_WGS_2_164572716	WI	MOUSE	f	SNP			C	T
ss148207600	ENSMUSSNP5207641	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6389418					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163482653 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397465	regulatory region 397465			1924 bp upstream
Rr569443	regulatory region 569443			within coordinates
Rr569444	regulatory region 569444			85 bp distal
Rr569445	regulatory region 569445			836 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27319	transcription start site region 27319			1391 bp upstream