rs6388437 SNP Detail

Summary

• ID
  rs6388437
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:59403517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCGCTGCA GCGGGGCGGA
  GACCAGCAGC TTCTACGCTG GGCGGTGAGC CAGCAAGGAG GTGGAGTTCA CGTGCGGGCA
  GATCCACGCC AGCTAGGCGC GCCCCTCCGC TGTGACCAGG CCCCAGTGGC TGAGTCCCGC
  CTGCACCCAG ACAGGCAGCA GCCTCCCTGC GAGCTCCTAC CCAGCCAGCC CTCGAGGCCC
  W
  CAGCTCAGGG AGCCTAGCGC CCTGGGGGAG CTTAGGGGAC TGGCTGACTG TGCCTCTGGT
  GCAAGGGAAC CAGTGACAGA TGGAAAGTTA AGATGGAGAT TAGGGAAAAG GGCTGGGGAC
  CCAGAGAGAC TCAGCAGGAA GTCTGGCCCT CACTCCCTCT AGCAATTCAC TATTCACTCT
  GTCTCTGTAT AGAGTAGGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8794603	WI_WGS_6_59955076	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6388437					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:59403517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17493	CpG island 17493	within coordinates
Gprin3	GPRIN family member 3	238 bp upstream
Rr631269	regulatory region 631269	249 bp distal
Rr631270	regulatory region 631270	within coordinates
Tssr61184	transcription start site region 61184	187 bp upstream