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rs6376252 SNP Detail
Summary
  • ID
    rs6376252
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr6:34452422 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAGAACTCAC TGTCCTTGAG
    AGACGCTCTC TCAGAAAGGG GTAGCTGCAA CTATCATGAG CTAAAATGCA TAAATGGGAC
    ATACAGCTTG CTACAAGCAG GCCATCATGA CACCAGTTCA TGGTGTGTCA AGATTTTCAT
    CCTAAATAAC TGATCTGAGC ACCCATTAGC TGGTCACAAA CTTATTGGAC TTGTTTATAG
    R
    ATTAACTAGG TGAGTTCAGA AGACACTAAG TGGAACAGCT TTCAGAAACC AAGAAGGGGA
    ATTTTCCCGT CTGCTCAGGC ACACATAACA TTTCTTATCT TTCTCATTCA CGTTTTGACA
    CACGTTTCAG ACCTTGTGTG GTAGTTCAAG CCTGCTTAGT AGCTTCCAGC TCTGGTACCA
    GACCCGAGTG ACAAGCTGGC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
C57BL/6J
CZECHII/EiJ
ss8782398 WI_WGS_6_34651928 WI MOUSE f SNP A G
SNP Consensus Information
SNP Consensus Type
C57BL/6J
CZECHII/EiJ
rs6376252 SNP A G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:34452422 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bpgm 2,3-bisphosphoglycerate mutase 869 bp upstream
Cpgi17283 CpG island 17283 639 bp proximal
Rr399609 regulatory region 399609 546 bp upstream
Rr628315 regulatory region 628315 1753 bp distal
Rr628316 regulatory region 628316 1249 bp distal
Rr628317 regulatory region 628317 230 bp proximal
Rr628318 regulatory region 628318 731 bp proximal
Tssr55509 transcription start site region 55509 799 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory