rs6376252 SNP Detail

Summary

• ID
  rs6376252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:34452422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAACTCAC TGTCCTTGAG
  AGACGCTCTC TCAGAAAGGG GTAGCTGCAA CTATCATGAG CTAAAATGCA TAAATGGGAC
  ATACAGCTTG CTACAAGCAG GCCATCATGA CACCAGTTCA TGGTGTGTCA AGATTTTCAT
  CCTAAATAAC TGATCTGAGC ACCCATTAGC TGGTCACAAA CTTATTGGAC TTGTTTATAG
  R
  ATTAACTAGG TGAGTTCAGA AGACACTAAG TGGAACAGCT TTCAGAAACC AAGAAGGGGA
  ATTTTCCCGT CTGCTCAGGC ACACATAACA TTTCTTATCT TTCTCATTCA CGTTTTGACA
  CACGTTTCAG ACCTTGTGTG GTAGTTCAAG CCTGCTTAGT AGCTTCCAGC TCTGGTACCA
  GACCCGAGTG ACAAGCTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8782398	WI_WGS_6_34651928	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6376252					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34452422 () rs orientation: forward

Symbol	Name	Function Class
Bpgm	2,3-bisphosphoglycerate mutase	869 bp upstream
Cpgi17283	CpG island 17283	639 bp proximal
Rr399609	regulatory region 399609	546 bp upstream
Rr628315	regulatory region 628315	1753 bp distal
Rr628316	regulatory region 628316	1249 bp distal
Rr628317	regulatory region 628317	230 bp proximal
Rr628318	regulatory region 628318	731 bp proximal
Tssr55509	transcription start site region 55509	799 bp upstream