rs6375803 SNP Detail

Summary

• ID
  rs6375803
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:34452393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGTTCAC ACACCATCAC
  TCCAGCCGAC AGAACTCACT GTCCTTGAGA GACGCTCTCT CAGAAAGGGG TAGCTGCAAC
  TATCATGAGC TAAAATGCAT AAATGGGACA TACAGCTTGC TACAAGCAGG CCATCATGAC
  ACCAGTTCAT GGTGTGTCAA GATTTTCATC CTAAATAACT GATCTGAGCA CCCATTAGCT
  S
  GTCACAAACT TATTGGACTT GTTTATAGAA TTAACTAGGT GAGTTCAGAA GACACTAAGT
  GGAACAGCTT TCAGAAACCA AGAAGGGGAA TTTTCCCGTC TGCTCAGGCA CACATAACAT
  TTCTTATCTT TCTCATTCAC GTTTTGACAC ACGTTTCAGA CCTTGTGTGG TAGTTCAAGC
  CTGCTTAGTA GCTTCCAGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8781947	WI_WGS_6_34651899	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6375803					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34452393 () rs orientation: forward

Symbol	Name	Function Class
Bpgm	2,3-bisphosphoglycerate mutase	898 bp upstream
Cpgi17283	CpG island 17283	668 bp proximal
Rr399609	regulatory region 399609	575 bp upstream
Rr628315	regulatory region 628315	1724 bp distal
Rr628316	regulatory region 628316	1220 bp distal
Rr628317	regulatory region 628317	259 bp proximal
Rr628318	regulatory region 628318	760 bp proximal
Tssr55509	transcription start site region 55509	828 bp upstream