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rs6375803 SNP Detail
Summary
  • ID
    rs6375803
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr6:34452393 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTGGGTTCAC ACACCATCAC
    TCCAGCCGAC AGAACTCACT GTCCTTGAGA GACGCTCTCT CAGAAAGGGG TAGCTGCAAC
    TATCATGAGC TAAAATGCAT AAATGGGACA TACAGCTTGC TACAAGCAGG CCATCATGAC
    ACCAGTTCAT GGTGTGTCAA GATTTTCATC CTAAATAACT GATCTGAGCA CCCATTAGCT
    S
    GTCACAAACT TATTGGACTT GTTTATAGAA TTAACTAGGT GAGTTCAGAA GACACTAAGT
    GGAACAGCTT TCAGAAACCA AGAAGGGGAA TTTTCCCGTC TGCTCAGGCA CACATAACAT
    TTCTTATCTT TCTCATTCAC GTTTTGACAC ACGTTTCAGA CCTTGTGTGG TAGTTCAAGC
    CTGCTTAGTA GCTTCCAGCT                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
C57BL/6J
CZECHII/EiJ
ss8781947 WI_WGS_6_34651899 WI MOUSE f SNP G C
SNP Consensus Information
SNP Consensus Type
C57BL/6J
CZECHII/EiJ
rs6375803 SNP G C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:34452393 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bpgm 2,3-bisphosphoglycerate mutase 898 bp upstream
Cpgi17283 CpG island 17283 668 bp proximal
Rr399609 regulatory region 399609 575 bp upstream
Rr628315 regulatory region 628315 1724 bp distal
Rr628316 regulatory region 628316 1220 bp distal
Rr628317 regulatory region 628317 259 bp proximal
Rr628318 regulatory region 628318 760 bp proximal
Tssr55509 transcription start site region 55509 828 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory