rs6375781 SNP Detail

Summary

• ID
  rs6375781
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:34452380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCACTACA GCACTGGGTT
  CACACACCAT CACTCCAGCC GACAGAACTC ACTGTCCTTG AGAGACGCTC TCTCAGAAAG
  GGGTAGCTGC AACTATCATG AGCTAAAATG CATAAATGGG ACATACAGCT TGCTACAAGC
  AGGCCATCAT GACACCAGTT CATGGTGTGT CAAGATTTTC ATCCTAAATA ACTGATCTGA
  R
  CACCCATTAG CTGGTCACAA ACTTATTGGA CTTGTTTATA GAATTAACTA GGTGAGTTCA
  GAAGACACTA AGTGGAACAG CTTTCAGAAA CCAAGAAGGG GAATTTTCCC GTCTGCTCAG
  GCACACATAA CATTTCTTAT CTTTCTCATT CACGTTTTGA CACACGTTTC AGACCTTGTG
  TGGTAGTTCA AGCCTGCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8781925	WI_WGS_6_34651886	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6375781					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34452380 () rs orientation: forward

Symbol	Name	Function Class
Bpgm	2,3-bisphosphoglycerate mutase	911 bp upstream
Cpgi17283	CpG island 17283	681 bp proximal
Rr399609	regulatory region 399609	588 bp upstream
Rr628315	regulatory region 628315	1711 bp distal
Rr628316	regulatory region 628316	1207 bp distal
Rr628317	regulatory region 628317	272 bp proximal
Rr628318	regulatory region 628318	773 bp proximal
Tssr55509	transcription start site region 55509	841 bp upstream