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rs6375163 SNP Detail
Summary
  • ID
    rs6375163
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:34452222 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTCCATCTGC CCTCATGAAG
    AAGAGGAAGA ACAGGTTGGC AGGTGTGTAC GATTGGGCAG ATTCCTTCTC CAGCTGTTCT
    GACCTGAGAA TCCACTGGCT AAGACAAGTA GCCACACCTG AGCCATCCAG GAGGTAGAGT
    TTAACTTTGC TAAGCCACCA TCACTACAGC ACTGGGTTCA CACACCATCA CTCCAGCCGA
    Y
    AGAACTCACT GTCCTTGAGA GACGCTCTCT CAGAAAGGGG TAGCTGCAAC TATCATGAGC
    TAAAATGCAT AAATGGGACA TACAGCTTGC TACAAGCAGG CCATCATGAC ACCAGTTCAT
    GGTGTGTCAA GATTTTCATC CTAAATAACT GATCTGAGCA CCCATTAGCT GGTCACAAAC
    TTATTGGACT TGTTTATAGA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
C57BL/6J
CZECHII/EiJ
ss8781303 WI_WGS_6_34651728 WI MOUSE f SNP C T
SNP Consensus Information
SNP Consensus Type
C57BL/6J
CZECHII/EiJ
rs6375163 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:34452222 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bpgm 2,3-bisphosphoglycerate mutase 1069 bp upstream
Cpgi17283 CpG island 17283 839 bp proximal
Rr399609 regulatory region 399609 746 bp upstream
Rr628315 regulatory region 628315 1553 bp distal
Rr628316 regulatory region 628316 1049 bp distal
Rr628317 regulatory region 628317 430 bp proximal
Rr628318 regulatory region 628318 931 bp proximal
Tssr55509 transcription start site region 55509 999 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory