rs6375163 SNP Detail

Summary

• ID
  rs6375163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:34452222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCATCTGC CCTCATGAAG
  AAGAGGAAGA ACAGGTTGGC AGGTGTGTAC GATTGGGCAG ATTCCTTCTC CAGCTGTTCT
  GACCTGAGAA TCCACTGGCT AAGACAAGTA GCCACACCTG AGCCATCCAG GAGGTAGAGT
  TTAACTTTGC TAAGCCACCA TCACTACAGC ACTGGGTTCA CACACCATCA CTCCAGCCGA
  Y
  AGAACTCACT GTCCTTGAGA GACGCTCTCT CAGAAAGGGG TAGCTGCAAC TATCATGAGC
  TAAAATGCAT AAATGGGACA TACAGCTTGC TACAAGCAGG CCATCATGAC ACCAGTTCAT
  GGTGTGTCAA GATTTTCATC CTAAATAACT GATCTGAGCA CCCATTAGCT GGTCACAAAC
  TTATTGGACT TGTTTATAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8781303	WI_WGS_6_34651728	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6375163					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34452222 () rs orientation: forward

Symbol	Name	Function Class
Bpgm	2,3-bisphosphoglycerate mutase	1069 bp upstream
Cpgi17283	CpG island 17283	839 bp proximal
Rr399609	regulatory region 399609	746 bp upstream
Rr628315	regulatory region 628315	1553 bp distal
Rr628316	regulatory region 628316	1049 bp distal
Rr628317	regulatory region 628317	430 bp proximal
Rr628318	regulatory region 628318	931 bp proximal
Tssr55509	transcription start site region 55509	999 bp upstream