rs6374164 SNP Detail

Summary

• ID
  rs6374164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:34452072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGTAAAT CAAATGAGCA
  GGCATCCTAA GGTTCAGAGT ACCCTCAAAT GTCAAATGCT GTATGGCTGT TAGGATTGGT
  TTTGCATGGC TGCCGTTACC CTTCCTGAGG AGAAAGCTTT GATACTACAG GGCAGCGGAA
  ATGTTTTCTG GTCCATCTGC CCTCATGAAG AAGAGGAAGA ACAGGTTGGC AGGTGTGTAC
  R
  ATTGGGCAGA TTCCTTCTCC AGCTGTTCTG ACCTGAGAAT CCACTGGCTA AGACAAGTAG
  CCACACCTGA GCCATCCAGG AGGTAGAGTT TAACTTTGCT AAGCCACCAT CACTACAGCA
  CTGGGTTCAC ACACCATCAC TCCAGCCGAC AGAACTCACT GTCCTTGAGA GACGCTCTCT
  CAGAAAGGGG TAGCTGCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8780300	WI_WGS_6_34651578	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6374164					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34452072 () rs orientation: forward

Symbol	Name	Function Class
Bpgm	2,3-bisphosphoglycerate mutase	1219 bp upstream
Cpgi17283	CpG island 17283	989 bp proximal
Rr399609	regulatory region 399609	896 bp upstream
Rr628315	regulatory region 628315	1403 bp distal
Rr628316	regulatory region 628316	899 bp distal
Rr628317	regulatory region 628317	580 bp proximal
Rr628318	regulatory region 628318	1081 bp proximal
Tssr55509	transcription start site region 55509	1149 bp upstream