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rs6374164 SNP Detail
Summary
  • ID
    rs6374164
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr6:34452072 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAAAGTAAAT CAAATGAGCA
    GGCATCCTAA GGTTCAGAGT ACCCTCAAAT GTCAAATGCT GTATGGCTGT TAGGATTGGT
    TTTGCATGGC TGCCGTTACC CTTCCTGAGG AGAAAGCTTT GATACTACAG GGCAGCGGAA
    ATGTTTTCTG GTCCATCTGC CCTCATGAAG AAGAGGAAGA ACAGGTTGGC AGGTGTGTAC
    R
    ATTGGGCAGA TTCCTTCTCC AGCTGTTCTG ACCTGAGAAT CCACTGGCTA AGACAAGTAG
    CCACACCTGA GCCATCCAGG AGGTAGAGTT TAACTTTGCT AAGCCACCAT CACTACAGCA
    CTGGGTTCAC ACACCATCAC TCCAGCCGAC AGAACTCACT GTCCTTGAGA GACGCTCTCT
    CAGAAAGGGG TAGCTGCAAC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
C57BL/6J
CZECHII/EiJ
ss8780300 WI_WGS_6_34651578 WI MOUSE f SNP G A
SNP Consensus Information
SNP Consensus Type
C57BL/6J
CZECHII/EiJ
rs6374164 SNP G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:34452072 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bpgm 2,3-bisphosphoglycerate mutase 1219 bp upstream
Cpgi17283 CpG island 17283 989 bp proximal
Rr399609 regulatory region 399609 896 bp upstream
Rr628315 regulatory region 628315 1403 bp distal
Rr628316 regulatory region 628316 899 bp distal
Rr628317 regulatory region 628317 580 bp proximal
Rr628318 regulatory region 628318 1081 bp proximal
Tssr55509 transcription start site region 55509 1149 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory