rs6374162 SNP Detail

Summary

• ID
  rs6374162
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:34452071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGTAAA TCAAATGAGC
  AGGCATCCTA AGGTTCAGAG TACCCTCAAA TGTCAAATGC TGTATGGCTG TTAGGATTGG
  TTTTGCATGG CTGCCGTTAC CCTTCCTGAG GAGAAAGCTT TGATACTACA GGGCAGCGGA
  AATGTTTTCT GGTCCATCTG CCCTCATGAA GAAGAGGAAG AACAGGTTGG CAGGTGTGTA
  M
  GATTGGGCAG ATTCCTTCTC CAGCTGTTCT GACCTGAGAA TCCACTGGCT AAGACAAGTA
  GCCACACCTG AGCCATCCAG GAGGTAGAGT TTAACTTTGC TAAGCCACCA TCACTACAGC
  ACTGGGTTCA CACACCATCA CTCCAGCCGA CAGAACTCAC TGTCCTTGAG AGACGCTCTC
  TCAGAAAGGG GTAGCTGCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8780298	WI_WGS_6_34651577	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6374162					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34452071 () rs orientation: forward

Symbol	Name	Function Class
Bpgm	2,3-bisphosphoglycerate mutase	1220 bp upstream
Cpgi17283	CpG island 17283	990 bp proximal
Rr399609	regulatory region 399609	897 bp upstream
Rr628315	regulatory region 628315	1402 bp distal
Rr628316	regulatory region 628316	898 bp distal
Rr628317	regulatory region 628317	581 bp proximal
Rr628318	regulatory region 628318	1082 bp proximal
Tssr55509	transcription start site region 55509	1150 bp upstream