rs6361049 SNP Detail

Summary

• ID
  rs6361049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:168012165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAGCCTT TTGTGAAAGC
  GGTTCCCATC CGGGTGGATT TCCTACGGCC TCAGGCAGGT GTCTGAGCTG AAAGTGAGTG
  CTAACTCGGG GCAATTTGGC TTAAGCAAAG AAATTCTGTC ACTCCCCAAC AGGAAACTTC
  CAATATGGGG CCCGAATTGA ATTCTGAGAT CCAAAGAGTG GTACCCGGGC TCTTTCTTAC
  Y
  CATGGCCCCA CTCTGTGTCC CTTGGGTACG GCGGCATTCG TGGGCGGGCC CTTGGTGGTG
  GCACTCCTGC AACCTCAGGG AGAGTAACCC AGTGACAGAG AGAGGAACCC AAGGTGGTTT
  CTCATTGGGC CTGATTGGGT CATGTGCTTA GCTAGCCCAG TAGCTGTGGG CAAGGGCAGG
  CCCTGCTGTT AGAGAGTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8767144	WI_WGS_2_169167312	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6361049					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168012165 () rs orientation: forward

Symbol	Name	Function Class
Gm52960	predicted gene, 52960	within coordinates
Gm54130	predicted gene, 54130	within coordinates
Rr570913	regulatory region 570913	1158 bp distal
Rr570914	regulatory region 570914	524 bp distal
Rr570915	regulatory region 570915	within coordinates