rs6349097 SNP Detail

Summary

• ID
  rs6349097
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84209047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTCTATATTA
  AGTAGTTGGG GGCCAGCTTG AGATATATGA CAGCCTATAT CAAAANAATA ACAACAAAAA
  TAAAAAGAAA AGAAAGggaa ggaaggagag aaggggaagg aaaataggaa gagaggggag
  naaagaaggg agggaggGAC CGGTTCCGCA GTCAGCAAGT TTGGGAACAG ATGAGAAACT
  TTGATCAGGC TCCTGATTGC CCTGAGAACC AGGGTGACCT GAAGGAGGNG CTGAGCCTTG
  W
  GTGGCCCCTG Agctgctgct gctgctgctg ctgctgctgc tgAGTCCTCT GTGTAGATAG
  TGTTCTCCAT CTGTGGGACC CGCTGTCCTG ATGGACAGCT GCACAGCTCT GGCTGACCAA
  GTCCTCCAAT CGCCGCTGCA CTTGAGGATG GGCAGCAGCT GGAAGGGGCT CTGCCTGGCC
  AGTTCATGGT CACTGTCAGC CTCAGCCTGC CAATGTCATC CAATCTGCCC GTGTGGAGTG
  TGGAGCAGCT                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8755152	WI_WGS_6_85128920	WI	MOUSE	f	SNP							T		A
ss60904827	NES15950912	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6349097					SNP	T	T	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904827	NES15950912	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84209047 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Rr633014	regulatory region 633014	1604 bp distal
Rr633015	regulatory region 633015	890 bp distal
Rr633016	regulatory region 633016	524 bp distal
Rr633017	regulatory region 633017	1762 bp proximal