rs6349072 SNP Detail

Summary

• ID
  rs6349072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84209035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAGCCTA TATCAAAACA
  ATAACAACAA AAATAAAAAG AAAAGAAAGG AAGGAAGGAG AGAAGGGGAA GGAAAATAGG
  AAGAGAGGGG AGAAAAGAAG GGAGGGAGGG ACCGGTTCCA CAGTCAGCAA GTTTGGGAAC
  AGATGAGAAA CTTTGATCAG GCTCCTGATT GCCCTGAGAA CCAGGGTGAC CTGAAGGAGG
  Y
  GCTGAGCCTT GTGTGGCCCC TGAGCTGCTG CTGCTGCTGC TGCTGCTGCT GCTGAGTCCT
  CTGTGTAGAT AGTGTTCTCC ATCTGTGGGA CCCGCTGTCC TGATGGACAG CTGCACAGCT
  CTGGCTGACC AAGTCCTCCA ATCGCCGCTG CACTTGAGGA TGGGCAGCAG CTGGAAGGGG
  CTCTGCCTGG CCAGTTCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8755127	WI_WGS_6_85128908	WI	MOUSE	f	SNP								T		C
ss45968788	mCV23935710	ABI	CRAMUS_MOUSE	f	SNP		C	T								T
ss60904828	NES15950910	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C		T	T	T	C	T	T	C	C
ss133350749	ENSMUSSNP6649510	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6349072					SNP	C	C	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904828	NES15950910	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84209035 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Rr633014	regulatory region 633014	1592 bp distal
Rr633015	regulatory region 633015	878 bp distal
Rr633016	regulatory region 633016	512 bp distal
Rr633017	regulatory region 633017	1774 bp proximal