rs6347999 SNP Detail

Summary

• ID
  rs6347999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84208853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTAGCAG ATGAATTTGG
  GGGTGGACTT AATTCAGTCT ATAACAGCAG ACAAAAAAAA AAAAAAAAAA AAAAAAGACG
  GGTGTGGTGG CTCAGCTGGC AGTTCCTGCT TTCGAGATGT GAGATGTGGA AGAAGGAGGA
  TCTGGAGTTC TATATAAGTA GTTGGGGCCA GCTTGAGATA TATGACAGCC TATATCAAAA
  Y
  AATAACAACA AAAATAAAAA GAAAAGAAAG GAAGGAAGGA GAGAAGGGGA AGGAAAATAG
  GAAGAGAGGG GAGAAAAGAA GGGAGGGAGG GACCGGTTCC ACAGTCAGCA AGTTTGGGAA
  CAGATGAGAA ACTTTGATCA GGCTCCTGAT TGCCCTGAGA ACCAGGGTGA CCTGAAGGAG
  GTGCTGAGCC TTGTGTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8754052	WI_WGS_6_85128725	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6347999					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84208853 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Rr633014	regulatory region 633014	1410 bp distal
Rr633015	regulatory region 633015	696 bp distal
Rr633016	regulatory region 633016	330 bp distal
Rr633017	regulatory region 633017	1956 bp proximal