rs6345674 SNP Detail

Summary

• ID
  rs6345674
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84208467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGCGGAG TGGGGGAAGT
  GCGGTAAGTG CTATTCCACG CTGCCTCCCT CTCCAGGTTC TGGGCCCCCA ACAGAGGCTA
  GGAGTGGCTG GCTGCCAGGC CCTCCATACT TAAAGGCCTG GAAAAACCAG CCAGTGCCTA
  AGGTCTCCAT GCCAGGAGGG AGGATTACGG AGCTGGGGTG CAGATGGTGG GAACCAGCCT
  Y
  CACGGTCCAC CTCTGCACAG TGGCTTTCCT GCTGGATGGT CCCCAGACCT CCCAGATCTA
  AGGCCCTCCC TGGCCACCTT CATATCTCCC TTAACAGTGC TGTTGGATTG GGGGCCAGCT
  TTATGCTTCC ATGATCCTCA GCTTCTTCCT AAAGGGACCC TGAATATAGA CCCAGTCACA
  CTGGGATACT AGCAGATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8751725	WI_WGS_6_85128336	WI	MOUSE	f	SNP							T		C
ss60904831	NES15950969	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6345674					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904831	NES15950969	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84208467 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Rr633014	regulatory region 633014	1024 bp distal
Rr633015	regulatory region 633015	310 bp distal
Rr633016	regulatory region 633016	within coordinates