rs6341332 SNP Detail

Summary

• ID
  rs6341332
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84247832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAACATG GGCTGATAAA
  CATCAATAGG CCTGGTTGGT GCCAAAAAAG AAAGAGAGAA GACTGTGCTG TGCTGGCTCC
  CGCTCCCCGG ACCATGCTGT AGCTGCCAGC TCCTTAATCA TCTGGAGACA GCCGGCCGGC
  TCCCCTGGCC CCACCCCAGG CCAGGGCAGG CAAAGGCCAG GCCAGGCCAG GCGCAGGAAG
  Y
  AGCCACCACT GGGTCCTCAG CCACAGGCCA ACCTGGTCCA GGACCTCCCT TTGGTTGGGC
  TCTTAAGGCA TTCCTGCTTG TAGCCTCAAT GGCTCTCCAT GGCCCATGAG ACAGAACCTA
  CATATGCTGT CCTGATGTGA ATGGGCAAAC CCAGCCCTCA GCTCATTCTG TGCCCTCATG
  GCTCACCTGA TCTCACATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8747365	WI_WGS_6_85167558	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6341332					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84247832 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Gm67871	predicted gene, 67871	within coordinates
Rr633022	regulatory region 633022	1616 bp distal
Rr633023	regulatory region 633023	within coordinates
Rr633024	regulatory region 633024	288 bp proximal
Rr633025	regulatory region 633025	1764 bp proximal