rs6340398 SNP Detail

Summary

• ID
  rs6340398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84247663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGCCTTA ACTTTTTAAT
  CTGTCCGATG AGGCGTCTGG GCCAGTGGGG GGCTCTGACA CAGCCTGGGT GGCAGCAGAG
  CCAAGGTTCA AGGTCACGGC CCCACGTTCT CCCACTGGCT TGCTTTACTC TCCCCAGCCG
  GGAGGAACAT CCTGAACAGC GTTAAGAATA ATAAACATGG GCTGATAAAC ATCAATAGGC
  Y
  TGGTTGGTGC CAAAAAAGAA AGAGAGAAGA CTGTGCTGTG CTGGCTCCCG CTCCCCGGAC
  CATGCTGTAG CTGCCAGCTC CTTAATCATC TGGAGACAGC CGGCCGGCTC CCCTGGCCCC
  ACCCCAGGCC AGGGCAGGCA AAGGCCAGGC CAGGCCAGGC GCAGGAAGCA GCCACCACTG
  GGTCCTCAGC CACAGGCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8746430	WI_WGS_6_85167389	WI	MOUSE	f	SNP							C		T
ss60904621	NES15950340	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6340398					SNP	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904621	NES15950340	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84247663 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Gm67871	predicted gene, 67871	within coordinates
Rr633022	regulatory region 633022	1447 bp distal
Rr633023	regulatory region 633023	within coordinates
Rr633024	regulatory region 633024	457 bp proximal
Rr633025	regulatory region 633025	1933 bp proximal