rs6338687 SNP Detail

Summary

• ID
  rs6338687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84247274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAAGACT CTTGGGTTTT
  AGACACATTT CCTGTCTCTT CCTGTCTTCT TGCTGTTTTC CAGATGGTTC CTAGCTCCAA
  ACTTTCACTA CAGTTCAGAT TCTTACTGCT TCTGTTTTGT CTTGCCCATG ACATCCTTCC
  TACCAACTTT CTGCCTGCAT CTCAGCCTTC ATCCCCTGGA CAACTCCTTC TTCATCCTCC
  R
  GAACTCACTC CTCTAGCAAA CATTGACAAC TGCAGGACAA GGTACCAAGC ACGTATCGGG
  GGCTTGTAAG GGAAAGTACA CAATGATCAG GTGCTGGTAG GAATTTAACT GATTCAGGCT
  CAGTTCCACG TATAACCAAC CCTCTACACC CAATTCACTT ACAACCTTGG GCAAACCACC
  TCCCCCTTTC TGGCCTTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8744712	WI_WGS_6_85167000	WI	MOUSE	f	SNP							G		A
ss60904624	NES15950355	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A		G	G	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6338687					SNP	G	G	G	G	G	G	G	A	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904624	NES15950355	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84247274 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Gm67871	predicted gene, 67871	within coordinates
Rr633022	regulatory region 633022	1058 bp distal
Rr633023	regulatory region 633023	260 bp proximal
Rr633024	regulatory region 633024	846 bp proximal