rs6334453 SNP Detail

Summary

• ID
  rs6334453
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64655209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACATCTATTT
  TAATTCCTGT TAATTCATTA CTATAACCAC TAGTTGACCN CATAGTACAA CGGTAATAAC
  TATTANCTAN TAGTAATAGT ATTAACTATT GTTTCTAGTT GAGAAAANCC TNCGTTTGAT
  ATGGCCTTCT CTAATACAAA CTGGTCNCCC TCATCTGCAA ATTATNGTTA CAGAAACAGG
  TACGTCTCAC CTTGCAGAGC TGCTGTAAGN GTAAACCAGG AGTAGTTCAA ATGGGTTATG
  W
  GATGTGTTTT ATGTATTCTA CAAATGTCAG TTCTCATGTG TATTAAGTCC TTGAGACATC
  TTTACCCTGC CTCACACTTT GGGATTCAGA GTGATATTCT TCTGCTTTGT AATAGAATAT
  GTCTTTCTGG CCTACAGTTT GGGATCTGAA GCCACATGCT CTGCATAACT GGAATTGGGG
  GAAATGCTCA TTGAGTGGGT TGGGGGGAAG ATGATAGAGA AAGCCTTTCC TCTGTCCTCC
  TCTGGGGAGA                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8740466	WI_WGS_5_63563872	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6334453					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64655209 () rs orientation: forward

Symbol	Name	Function Class
Gm43838	predicted gene 43838	within coordinates
Gm52815	predicted gene, 52815	within coordinates
Rr367845	regulatory region 367845	712 bp downstream
Rr378042	regulatory region 378042	1918 bp upstream
Rr612035	regulatory region 612035	426 bp distal
Rr612036	regulatory region 612036	395 bp proximal
Rr612037	regulatory region 612037	1317 bp proximal