rs6334407 SNP Detail

Summary

• ID
  rs6334407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64655178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TGTGTTCCTG
  GGGCCACTCC CAAACTCTGT AACATCTATT TTAATTCCTG TTAATTCATT ACTATAACCA
  CTAGTTGACC NCATAGTACA ACGGTAATAA CTATTANCTA NTAGTAATAG TATTAACTAT
  TGTTTCTAGT TGAGAAAANC CTNCGTTTGA TATGGCCTTC TCTAATACAA ACTGGTCNCC
  CTCATCTGCA AATTATNGTT ACAGAAACAG GTACGTCTCA CCTTGCAGAG CTGCTGTAAG
  Y
  GTAAACCAGG AGTAGTTCAA ATGGGTTATG NGATGTGTTT TATGTATTCT ACAAATGTCA
  GTTCTCATGT GTATTAAGTC CTTGAGACAT CTTTACCCTG CCTCACACTT TGGGATTCAG
  AGTGATATTC TTCTGCTTTG TAATAGAATA TGTCTTTCTG GCCTACAGTT TGGGATCTGA
  AGCCACATGC TCTGCATAAC TGGAATTGGG GGAAATGCTC ATTGAGTGGG TTGGGGGGAA
  GATGATAGAG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss8740420	WI_WGS_5_63563841	WI	MOUSE	f	SNP		T		C
ss61173089	NES16687338	PERLEGEN	MM_PANEL2	f	SNP	T		T		T	T	C	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs6334407					SNP	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61173089	NES16687338	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64655178 () rs orientation: forward

Symbol	Name	Function Class
Gm43838	predicted gene 43838	within coordinates
Gm52815	predicted gene, 52815	within coordinates
Rr367845	regulatory region 367845	681 bp downstream
Rr378042	regulatory region 378042	1949 bp upstream
Rr612035	regulatory region 612035	395 bp distal
Rr612036	regulatory region 612036	426 bp proximal
Rr612037	regulatory region 612037	1348 bp proximal