rs6333892 SNP Detail

Summary

• ID
  rs6333892
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64655080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AATTTTNATC
  CCTTCATCTG CTACACCTGC TTAATGAATT CCCAANTTCC GTCTTAAAAT GGAAGATGCT
  AGGTTTCAGA ANGCTGGGGC TTCCAGTGTG TGTTCCTGGG GCCACTCCCA AACTCTGTAA
  CATCTATTTT AATTCCTGTT AATTCATTAC TATAACCACT AGTTGACCNC ATAGTACAAC
  GGTAATAACT ATTANCTANT AGTAATAGTA TTAACTATTG TTTCTAGTTG AGAAAANCCT
  W
  CGTTTGATAT GGCCTTCTCT AATACAAACT GGTCNCCCTC ATCTGCAAAT TATNGTTACA
  GAAACAGGTA CGTCTCACCT TGCAGAGCTG CTGTAAGNGT AAACCAGGAG TAGTTCAAAT
  GGGTTATGNG ATGTGTTTTA TGTATTCTAC AAATGTCAGT TCTCATGTGT ATTAAGTCCT
  TGAGACATCT TTACCCTGCC TCACACTTTG GGATTCAGAG TGATATTCTT CTGCTTTGTA
  ATAGAATATG                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8739904	WI_WGS_5_63563743	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6333892					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64655080 () rs orientation: forward

Symbol	Name	Function Class
Gm43838	predicted gene 43838	within coordinates
Gm52815	predicted gene, 52815	within coordinates
Rr367845	regulatory region 367845	583 bp downstream
Rr612035	regulatory region 612035	297 bp distal
Rr612036	regulatory region 612036	524 bp proximal
Rr612037	regulatory region 612037	1446 bp proximal