rs6331530 SNP Detail

Summary

• ID
  rs6331530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108222834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTTTGAA CCTTCAGATA
  TGTTTATTTC TGTTGGAATC CCCAGATGTC AGGAAATTAG TAAGGGACCA TGGCAATGGG
  GTTTTCAAGG GAGGAAAGGT TGGACACAGA TATATGAAAA GGGAAAGTGG GAGCAGGAAT
  GATGAAATGG GGTATAGGAT GGGAGGAGGA AGAGGTAATA CAAGGAGGGA TATAAAGCGG
  R
  TGTCGTGGCG CACGCCTTTA ATCCCAGCAC TCAGGAGGCA GAGGCAGGCA GATTTCTGAG
  TTTGAGGCCA GCCTGGTCTA CAAAGTGAGT TCCAGGACAG CCAGGGCTAT ACAGAGAAAT
  CCTATCTCAA AAAAACAAAA CAAAACAAAA ACAACAAAAA ACAACAAAAA CAAACAAACA
  AAAAACAAAA AAAGGAGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8737531	WI_WGS_3_108807709	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6331530					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108222834 () rs orientation: forward

Symbol	Name	Function Class
Rr583206	regulatory region 583206	1034 bp distal
Rr583207	regulatory region 583207	1055 bp distal
Sort1	sortilin 1	Intron