rs6297431 SNP Detail

Summary

• ID
  rs6297431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138513179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGTGACC CGAATTGGAA
  GTGATCACGA TCTGAGATGG ACCTGCGCTT GCTCTGTAAA TCGCATGGTT GCCAACTAAG
  CCACGAGCCC TGCCTCACAC TGCTTTACTG CATTTTCAAA AGACTTTCTT ATTTCTAGAC
  CTTACTAGGT CTTGCTCACT GTTTGTGCTA ACACACGCCA AAGAAGATGA AAGCCAGAGC
  R
  GTATGTTACC CTCTGCCGTT GAGCTCCTGT TTGTGTCGTA GCCTGGTCAG TCTTCAAGTG
  CCAACAAGTC GTTCTGGTTC ATTTTTCTTG CCCTTCTTTA TTGGCTCTGA GGTTTTCAGT
  GGTCAGCCTG TGCTTATAGC TTCAAGTCAT TAACTTTGAT CAAAACAGGA GGGATTTGAG
  AAGTCAAAGG ACAGAGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8703338	WI_WGS_3_139309290	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6297431					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138513179 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586202	regulatory region 586202			517 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant