rs6297358 SNP Detail

Summary

• ID
  rs6297358
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138513133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGACTGCA CATTTCACAT
  CTATGAGGGC TAAGCACCTG GGTTACACAG GTGACCCGAA TTGGAAGTGA TCACGATCTG
  AGATGGACCT GCGCTTGCTC TGTAAATCGC ATGGTTGCCA ACTAAGCCAC GAGCCCTGCC
  TCACACTGCT TTACTGCATT TTCAAAAGAC TTTCTTATTT CTAGACCTTA CTAGGTCTTG
  S
  TCACTGTTTG TGCTAACACA CGCCAAAGAA GATGAAAGCC AGAGCGGTAT GTTACCCTCT
  GCCGTTGAGC TCCTGTTTGT GTCGTAGCCT GGTCAGTCTT CAAGTGCCAA CAAGTCGTTC
  TGGTTCATTT TTCTTGCCCT TCTTTATTGG CTCTGAGGTT TTCAGTGGTC AGCCTGTGCT
  TATAGCTTCA AGTCATTAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8703265	WI_WGS_3_139309244	WI	MOUSE	f	SNP						C		G
ss47000418	NES10878001	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		G		C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6297358					SNP	C	C	C	C	C	C	G	G	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47000418	NES10878001	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138513133 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586202	regulatory region 586202			563 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant