rs6295188 SNP Detail

Summary

• ID
  rs6295188
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79126780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGAGTCA GGTGACAAAC
  GTCTGTGGAC TTGGCCTTAA GGAGGAGGAG AGAGGGACAC ACACTTGCTC AGACAGTGGT
  CACAAGCCAG GAACTGCCCG GATGGCAACA TGCTCTCCTT TGGGAGTTCT TCAGACATAA
  ATGTCATTTA TCCTTCTGAG CAAATGCTCA CAAGCAGGGA CTCAGAGGGC TGTCTCCAAC
  R
  TTACTCATGA GGCGTACAAA GGCTACATTT TCAGGGCTTG GTGGTGCAGC AAAGTGCCTG
  TGTCTCCCAA GATGACCATT CAGTTTACAA GTTTTATTTA CAAGGTCCCT AGTATTTCCA
  CACTAAAACA TATGCAACAG CTACACTAAG AATGAGGAAG GAGAGAGAAC ACATCCTTGG
  GGCCCACCTC TCCTTCCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8701085	WI_WGS_3_79885374	WI	MOUSE	f	SNP							G		A
ss47028801	NES10757739	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6295188					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47028801	NES10757739	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79126780 () rs orientation: forward

Symbol	Name	Function Class
4921511C10Rik	RIKEN cDNA 4921511C10 gene	within coordinates
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2	Intron
Rr375215	regulatory region 375215	within coordinates
Rr578485	regulatory region 578485	14 bp distal
Rr578486	regulatory region 578486	1918 bp proximal