rs6294204 SNP Detail

Summary

• ID
  rs6294204
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:64871632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGCACAG CTTGAACAGC
  AGGTGATGGG TATCAAATAC AGGTGTTCAT TTTGGCAATG AAAGTTATTG GGGTTGGTGT
  AGGGGTAAAA TCTGTTCTGT GTGCAATAAG TCAAATGTCC ATCTGCCATG TCCTCTCTCT
  ACAAGCCTTG GCTAGATCCC TTTGGATTTG GAATAGAAAG ATCTATGCTT AAATCCTGGT
  K
  GTATCTCTGC ATACATAAAT GGATGTGAGA TCATGCATTC CCCTTATGTT TGAGGTTCTG
  GCTTCTTGCT ACACGCATGT TTAGCAAGAG GCCAGATGAG GAAGAGATCA CTCACACGGA
  CAATCAAAAA ACCAGATCAA TGGAGTGTGC CACCAACTTC ATTATGTCTT CTTCTGGCTT
  TTTCCCTACA TGACTTTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8700099	WI_WGS_3_65490595	WI	MOUSE	f	SNP	T							G
ss45426597	mCV23288024	ABI	CRAMUS_MOUSE	f	SNP		T	G					G		G
ss51536669	NES14687989	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	G	G	G	G	G	G	G	G
ss135246324	ENSMUSSNP3985169	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6294204					SNP	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51536669	NES14687989	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:64871632 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm54196	predicted gene, 54196			within coordinates
Kcnab1	potassium voltage-gated channel, shaker-related subfamily, beta member 1			Intron
				Noncoding-Transcript-Variant
Rr577647	regulatory region 577647			250 bp proximal