rs6293498 SNP Detail

Summary

• ID
  rs6293498
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79126502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTG TGTGCCTTGA CATTTTTAGA
  M
  ATAAGCTGGC GCCTGTGAGC TCTAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8699393	WI_WGS_3_79885096	WI	MOUSE	f	SNP		C	A
ss45416427	mCV23538063	ABI	CRAMUS_MOUSE	f	SNP	A	C		A
ss135368961	ENSMUSSNP5241575	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320810467	CHEV_3_79023117	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6293498					SNP	A	C	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79126502 () rs orientation: forward

Symbol	Name	Function Class
4921511C10Rik	RIKEN cDNA 4921511C10 gene	within coordinates
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2	Intron
Rr375215	regulatory region 375215	within coordinates
Rr578485	regulatory region 578485	within coordinates