rs6291858 SNP Detail

Summary

• ID
  rs6291858
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:64871156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAACTCA TATTCCTTAT
  GATCTAGGAC AGTGGCTTTA CTGCATCCTA ATGCTGCTCT CACTGTTATC AGAACTACTT
  GAATTCCCAG AATTTGTTCA CCTCTGTAGG TTTCAAGAAG GCTAGACAAG ATTCTTGGCA
  CAGGTAATTC TCAAGATGAG TTTTGATAGA CTTGCTTTCT GCCAGCAGAG CAACAAATGA
  K
  CTCAGAGCTT AGAAGATTCT GGCTGCATTT GTGGAAGACC TGAGATTATG AAAGAAAGTC
  ATGTAAGAAG ATAATCTCAA GTATCAATCA TGAGGTCAGT GAATGGCATG TGCCAGTTTG
  ATTGAGCATC TTTTTTATGC AAAGTATCAC AAAGATGAAT TACTACAAAA TCTACATATA
  TTCAAGAGAA ATTCTATAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8697752	WI_WGS_3_65490119	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6291858					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:64871156 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm54196	predicted gene, 54196			within coordinates
Kcnab1	potassium voltage-gated channel, shaker-related subfamily, beta member 1			Intron
				Noncoding-Transcript-Variant
Rr577647	regulatory region 577647			726 bp proximal