rs6257925 SNP Detail

Summary

• ID
  rs6257925
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74518722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTAAGCT TATCTCTGTA
  GATCCTTCCG TAGTAGTCTC CCAATTTGCT TTTCAAAAGT CTTTTCCAAT TGCTGCCACA
  GTGCTCAGTG CAACCCAGAT GGGCGCCCTG GGGAGGCAGC TTTTAATTTG TCCCTGTCCA
  CTCTCTGTCC AAAAAGTGAC AGAATCCAGA GGCAGCTCAC GGCTCTAATT CAGGGAGACC
  R
  TAGGAACCCA TAGGTCCTCT TAGGCCCAGA GCCTCCACCT TACCCTTCTG AAGAAGACAA
  GAGAGTGAAG ATACAAGCCA CTTTATTATT ATTATTATTA TTATTATTAC AAATGGTAAT
  TTCTTGCTAA GGCGACCTTT TAGGTTTTTT TCTGTGGAAA AAAAAACTGC CAGGGAGACA
  GGCGTCTTGG TACAAATATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8663708	WI_WGS_2_75549533	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6257925					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74518722 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11795	CpG island 11795	331 bp distal
Gm28309	predicted gene 28309	within coordinates
Gm74919	predicted gene, 74919	within coordinates
Hoxd11	homeobox D11	1362 bp downstream
Igs15	intergenic site 15	within coordinates
Rr44604	regulatory region 44604	1522 bp distal
Rr373365	regulatory region 373365	1244 bp upstream
Rr559347	regulatory region 559347	444 bp distal
Rr559348	regulatory region 559348	1881 bp distal
Rr559349	regulatory region 559349	within coordinates
Rr559350	regulatory region 559350	532 bp proximal
Tssr18405	transcription start site region 18405	1821 bp downstream