rs6257891 SNP Detail

Summary

• ID
  rs6257891
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74518699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGGCTC GGCCCTTCTC
  CATCTCTTAA GCTTATCTCT GTAGATCCTT CCGTAGTAGT CTCCCAATTT GCTTTTCAAA
  AGTCTTTTCC AATTGCTGCC ACAGTGCTCA GTGCAACCCA GATGGGCGCC CTGGGGAGGC
  AGCTTTTAAT TTGTCCCTGT CCACTCTCTG TCCAAAAAGT GACAGAATCC AGAGGCAGCT
  S
  ACGGCTCTAA TTCAGGGAGA CCATAGGAAC CCATAGGTCC TCTTAGGCCC AGAGCCTCCA
  CCTTACCCTT CTGAAGAAGA CAAGAGAGTG AAGATACAAG CCACTTTATT ATTATTATTA
  TTATTATTAT TACAAATGGT AATTTCTTGC TAAGGCGACC TTTTAGGTTT TTTTCTGTGG
  AAAAAAAAAC TGCCAGGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8663674	WI_WGS_2_75549510	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6257891					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74518699 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11795	CpG island 11795	308 bp distal
Gm28309	predicted gene 28309	within coordinates
Gm74919	predicted gene, 74919	within coordinates
Hoxd11	homeobox D11	1339 bp downstream
Igs15	intergenic site 15	within coordinates
Rr44604	regulatory region 44604	1499 bp distal
Rr373365	regulatory region 373365	1267 bp upstream
Rr559347	regulatory region 559347	421 bp distal
Rr559348	regulatory region 559348	1858 bp distal
Rr559349	regulatory region 559349	within coordinates
Rr559350	regulatory region 559350	555 bp proximal
Tssr18405	transcription start site region 18405	1798 bp downstream