rs6257465 SNP Detail

Summary

• ID
  rs6257465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74518657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAAATGC GCCAAGTAGG
  AAGGAGTCTT TTGTGTCTGT GTAGAGAGGC TCGGCCCTTC TCCATCTCTT AAGCTTATCT
  CTGTAGATCC TTCCGTAGTA GTCTCCCAAT TTGCTTTTCA AAAGTCTTTT CCAATTGCTG
  CCACAGTGCT CAGTGCAACC CAGATGGGCG CCCTGGGGAG GCAGCTTTTA ATTTGTCCCT
  R
  TCCACTCTCT GTCCAAAAAG TGACAGAATC CAGAGGCAGC TCACGGCTCT AATTCAGGGA
  GACCATAGGA ACCCATAGGT CCTCTTAGGC CCAGAGCCTC CACCTTACCC TTCTGAAGAA
  GACAAGAGAG TGAAGATACA AGCCACTTTA TTATTATTAT TATTATTATT ATTACAAATG
  GTAATTTCTT GCTAAGGCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8663248	WI_WGS_2_75549468	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6257465					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74518657 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11795	CpG island 11795	266 bp distal
Gm28309	predicted gene 28309	within coordinates
Gm74919	predicted gene, 74919	within coordinates
Hoxd11	homeobox D11	1297 bp downstream
Igs15	intergenic site 15	within coordinates
Rr44604	regulatory region 44604	1457 bp distal
Rr373365	regulatory region 373365	1309 bp upstream
Rr559347	regulatory region 559347	379 bp distal
Rr559348	regulatory region 559348	1816 bp distal
Rr559349	regulatory region 559349	within coordinates
Rr559350	regulatory region 559350	597 bp proximal
Tssr18405	transcription start site region 18405	1756 bp downstream