rs6255501 SNP Detail

Summary

• ID
  rs6255501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:81930595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA GAGCTGAGAT TAGGCAAGGG
  Y
  TGGACAGTGA AGGCTGCATG AGGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8661282	WI_WGS_6_82840503	WI	MOUSE	f	SNP		T	C
ss45954762	mCV22619646	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss133337970	ENSMUSSNP2038744	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321840534	CHEV_6_81903608	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6255501					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81930595 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gcfc2	GC-rich sequence DNA binding factor 2			Intron
				Noncoding-Transcript-Variant
Rr632565	regulatory region 632565			80 bp proximal