rs6254410 SNP Detail

Summary

• ID
  rs6254410
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:81930412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTAGGGA GGACACACAT
  GATTACTTGG TGTTTTCTTT TAGCTCTTCC GAAATATTCT TCTTTGGAAT GGCCTTCTCC
  CAGATGACAC CTTGCAAGAT CTGGGACTGG GGAAGCTGCT GAATCGCTAC CTTATCATCT
  CTCTTACTAA TGCCGTCCCT GGACCAGATG TGGTTAAAAA GTGCAGCCAG GTAAGTTGTA
  K
  AGAGACCAAT TCTAATTATA ACATTTTTAT ATATACTGCT CGGCGTGGTA GCTTGCATCT
  CTAACTCCAG CACTAGAGAC TCTGAAGTAG AGGAAGTGTT GGAAGCTCCA GACAACCTGG
  GCTACAGGAG GGTGAGACCC TCTCAAAGCA GCCACAGAGC AAGAGCTGAG ATTAGGCAAG
  GGTTGGACAG TGAAGGCTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8660191	WI_WGS_6_82840320	WI	MOUSE	f	SNP						T	G
ss51348177	NES13741277	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T			T	G	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6254410					SNP	T	T	T	T	T	T	G	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51348177	NES13741277	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81930412 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gcfc2	GC-rich sequence DNA binding factor 2			Intron
				Noncoding-Transcript-Variant
Rr632565	regulatory region 632565			263 bp proximal