rs6250485 SNP Detail

Summary

• ID
  rs6250485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84242492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTCTTAA CTGTTGAGCC
  ATCTCTCCGG CCCCCAGTGT GAACAGTAAC TGACCAGTAA CCCTACCTTG TCACCTTGCT
  GTCTTCTCTT ACTTCAGGTG GTGTGTTCTT GGGAGCCCCC ACAGGGTCCG GATTAGGGTG
  CCCCCACCCT ATGCCCCCTT TGAGCCATCT TTTCTGGAAA GAAATGACTG CCAGATTTTA
  Y
  GTATCTCAAA AGAAGTGTCG CCAACCTTCG CTTTCCATGC CTTGCATTTT GAGCACAACA
  TATGTGGCCT TTTCAGATGC TACCTTGGGC TATGGCTGGT GTCGCTTACG CTGTGTCCTA
  GTATAGCTTC AGAGAATGAA GAAGGTATTT AACTTTCACC TCCTCAGTTT CCTTTGGCTG
  AGGGCTTCTC TAGGGAGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8656255	WI_WGS_6_85162218	WI	MOUSE	f	SNP							C		T
ss60904650	NES15950392	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6250485					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904650	NES15950392	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84242492 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Gm67871	predicted gene, 67871	within coordinates
Rr633021	regulatory region 633021	1364 bp proximal