rs6239785 SNP Detail

Summary

• ID
  rs6239785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27430651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTCAGGAT TCGAGGAAGG
  GAAGGACTGT TCTACACGAC GGCGGTTGTC CCTGCTTTTG TATCCACGTC CGGGGATCTT
  CGGTTAAGTC CATTTTATTG AAGAAGCCAT CGATCTAGAA CAACCTGGTA GTATCAGTCC
  CCTTCGTAAA ACCACGGTGT GTTAAGAATG CACACGTATC TAAAGAGGGA CAGGCATACT
  Y
  ACACCTGTAC AAGTGTCATG CACATTTTTT CAAACGCATG GCCTAGTGCA CACGAGCACA
  TATATGCATA CAAACAGTGA AGGAGCTGTA TGTATCGGCT GTGTTTACTT TGTAATTTTC
  GGGCTGCTTG TGTTTTACAG CAGTCCGTAG TTAGCTGGGC ATGTGTTTCA TACCTGTACC
  TGGGAAGTGC AGGCAGTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8645532	WI_WGS_2_27843190	WI	MOUSE	f	SNP							C		T
ss37414931	NES08763241	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6239785					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37414931	NES08763241	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27430651 () rs orientation: forward

Symbol	Name	Function Class
Gm13421	predicted gene 13421	within coordinates
Gm25541	predicted gene, 25541	709 bp upstream
Gm75180	predicted gene, 75180	within coordinates
Rr367141	regulatory region 367141	313 bp downstream
Rr396837	regulatory region 396837	565 bp downstream
Rr553572	regulatory region 553572	1644 bp distal
Rr553573	regulatory region 553573	405 bp distal
Rr553574	regulatory region 553574	within coordinates
Tssr16857	transcription start site region 16857	176 bp downstream