rs6237580 SNP Detail

Summary

• ID
  rs6237580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127103192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAACTATCT TGTCCTGACT ATCCCTAAAA AATGGCAACC
  CGCTTCCTAA GAGAACACCT TGTGGCGAGG TAGACCATGT ACCCCATATG TTTGTCTGTT
  Y
  TGCTGCCTTC TTGGAGATGG CATCTCTAAC TGAACTATTT TTGTTGGGGT TTTCTTTTGT
  AAAAACCTCA GGGTGGTGGG TAGCCTTTTG TGTGAACCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8643315	WI_WGS_2_128241800	WI	MOUSE	f	SNP		T	C
ss45248982	mCV22837332	ABI	CRAMUS_MOUSE	f	SNP	T	T		C
ss147524733	ENSMUSSNP4304732	ENSEMBL	ENSEMBL_Sanger	f	SNP				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6237580					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127103192 () rs orientation: forward

Symbol	Name	Function Class
Rr564482	regulatory region 564482	1598 bp distal
Tmem127	transmembrane protein 127	164 bp downstream
Tssr20002	transcription start site region 20002	842 bp upstream